山本 尚貴

所属

• 社会システムPF開発部
  InfoTech-AS
• Website: https://sites.google.com/view/tyamamoto/home

学位・経歴

• 博士（理学）

• 2024-
  

  トヨタ自動車株式会社

• 2024-
  

  理化学研究所 生命機能科学研究センター 客員研究員

• 2017-
  2024

  理化学研究所 生命機能科学研究センター 研究員

• 2019
  

  シラキュース大学 物理学科 訪問研究員 (日本学術振興会 特別研究員 PD)

• 2014-
  2017

  東京大学大学院 理学系研究科 物理学専攻 博士課程 (日本学術振興会 特別研究員 DC1)

• 2012-
  2014

  東京大学大学院 理学系研究科 物理学専攻 修士課程

• 2011-
  2012

  東京大学大学院 理学系研究科 化学専攻 修士課程

• 2007-
  2011

  東京大学 工学部 化学生命工学科

主な論文・著書・講演

著書

• [14] Takaki Yamamoto, Tomoki Ishibashi, Yuko Mimori-Kiyosue, Sylvain Hiver, Naoko Tokushige, Mitsusuke Tarama, Masatoshi Takeichi, Tatsuo Shibata,
  “Epithelial cell chirality emerges through the dynamic concentric pattern of actomyosin cytoskeleton”, bioRxiv, 2023.08.16.553476 (2023).

• [13] Takaki Yamamoto, Katie Cockburn, Valentina Greco, Kyogo Kawaguchi,
  “Probing the rules of cell coordination in live tissues by interpretable machine learning based on graph neural networks”, PLOS Computational Biology, 18(9):e1010477 (2022).

• [12] Takaki Yamamoto, Daniel M. Sussman, Tatsuo Shibata and M. Lisa Manning,
  "Non-monotonic fluidization generated by fluctuating edge tensions in confluent tissues”, Soft matter, 18, 2168 (2022).

• [11] John Devany, Daniel M. Sussman, Takaki Yamamoto, M. Lisa Manning, Margaret L. Gardel,
  "Cell cycle-dependent active stress drives epithelia remodeling”, Proceedings of National Academy of Science, 118, 10 (2021).

• [10] Ritsuko Morita, Noriko Sanzen, Hiroko Sasaki, Tetsutaro Hayashi, Mana Umeda, Mika Yoshimura, Takaki Yamamoto, Tatsuo Shibata, Takaya Abe, Hiroshi Kiyonari, Yasuhide Furuta, Itoshi Nikaido, Hironobu Fujiwara,
  "Tracing the origin of hair follicle stem cells”, Nature, 594, 547 (2021).

• [9] Hiroko Saito, Fumiko Matsukawa-Usami, Toshihiko Fujimori, Toshiya Kimura, Takahiro Ide, Takaki Yamamoto, Tatsuo Shibata, Kenta Onoue, Satoko Okayama, Shigenobu Yonemura, Kazuyo Misaki, Mika Toya, Masatoshi Takeichi,
  “Tracheal motile cilia in mice require CAMSAP3 for the formation of central microtubule pair and coordinated beating”, Molecular Biology of the Cell, 32, 20 (2021).

• [8] Takaki Yamamoto, Tetsuya Hiraiwa and Tatsuo Shibata,
  “Collective cell migration of epithelial cells driven by chiral torque generation”, Physical Review Research, 2, 043326 (2020).

• [7] Masayuki Ozawa, Sylvain Hiver, Takaki Yamamoto, Tatsuo Shibata, Srigokul Upadhyayula, Yuko Mimori-Kiyosue, Masatoshi Takeichi,
  “Adherens junction serves to generate cryptic lamellipodia required for collective migration of epithelial cells”, Journal of Cell Biology, 219 (10) (2020).

• [6] Federico lancia, Takaki Yamamoto, Alexander Ryabchun, Tadatsugu Yamaguchi, Masaki Sano, Nathalie Katsonis,
  “Reorientation behavior in the helical motility of light-responsive spiral droplets”, Nature Communications, 10, 5238 (2019).

• [5] Takaki Yamamoto and Masaki Sano,
  “Hydrodynamic rotlet dipole driven by spinning chiral liquid crystal droplets”, Physical Review E, 99, 022704 (2019).

• [4] Takaki Yamamoto and Masaki Sano,
  “Theoretical model of chirality-induced helical self-propulsion”, Physical Review E, 97, 012607 (2018).

• [3] Takaki Yamamoto and Masaki Sano,
  “Chirality-induced helical self-propulsion of cholesteric liquid crystal droplets”, Soft Matter, 13, 3328 (2017).

• [2] Takaki Yamamoto, Masafumi Kuroda, and Masaki Sano,
  “Three-dimensional analysis of thermo-mechanically rotating cholesteric liquid crystal droplets under a temperature gradient”, Europhysics Letters, 109, 46001 (2015).

• [1] Takaki Yamamoto, Junichi Hatano, Takafumi Nakagawa, Shigeru Yamaguchi, and Yutaka Matsuo,
  “Small molecule solution-process bulk heterojunction solar cells with inverted structure using porphyrin donor”, Applied Physics Letters, 102, 013305 (2013).

講演

Invited talks

• 山本尚貴、「グラフニューラルネットワークによる多細胞ダイナミクスのルール推定」、液体・ガラスへのデータ駆動アプローチ グラフニューラルネットワークとその周辺 (2023).

• Takaki Yamamoto, “Chiral cytoplasmic flow emerging from the spatial organization of actin and myosin cytoskeleton”, WCB2022 (2022).

• 山本尚貴、「カイラルな液晶液滴の自発らせん運動」、細胞を創る研究会11.0 (2018).

• 山本尚貴、「キラルな液晶液滴の自発らせん運動」、日本物理学会 2016年 秋季大会 ソフトアクティブマターシンポジウム (2016).

Selected talks

• Takaki Yamamoto, Katie Cockburn, Valentina Greco, Kyogo Kawaguchi, “Probing the rules of cell coordination in live tissues by interpretable machine learning based on graph neural networks”, STATPHYS28 (2023)

• Takaki Yamamoto, Daniel M. Sussman, Tatsuo Shibata and M. Lisa Manning, “Non-monotonic fluidization generated by fluctuating edge tensions in confluent tissues”, RIKEN BDR symposium 2021 (2021).

• Takaki Yamamoto, Tetsuya Hiraiwa and Tatsuo Shibata, “Collective cell migration of epithelial cells driven by chiral torque generation”, EMBO Workshop Physics of living systems: From molecules to tissues (2021).

• Takaki Yamamoto and Masaki Sano, “Chirality-induced helical self-propulsion of cholesteric liquid crystal droplets”, STATPHYS26 (France, Lyon) (2016).

社外・団体等活動(役職)・表彰・受賞

Fellowship

• 理化学研究所 基礎特別研究員 (2020-2023, 採択後辞退)

• 日本学術振興会 特別研究員 PD (2018-2021, 2019年途中辞退)

• 日本学術振興会 特別研究員 DC1 (2014-2017)

Awards

• Best poster prize@International WE-Heraeus Physics School on "Model systems for understanding biological processes", Germany (2015)

• Bronze medal@iGEM 2009: international contest of synthetic biology, USA (2009).